autopilot: parallelize betweenness centrality
This commit parallelizes betweenness centrality calculation, by distributing the algo to N workers and creating partial results.
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7e50997bb4
commit
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@ -1,5 +1,10 @@
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package autopilot
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import (
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"fmt"
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"sync"
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)
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// stack is a simple int stack to help with readability of Brandes'
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// betweenness centrality implementation below.
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type stack struct {
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@ -50,6 +55,10 @@ func (q *queue) empty() bool {
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// shortest paths starting or ending at that node. This is a useful metric
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// to measure control of individual nodes over the whole network.
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type BetweennessCentrality struct {
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// workers number of goroutines are used to parallelize
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// centrality calculation.
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workers int
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// centrality stores original (not normalized) centrality values for
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// each node in the graph.
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centrality map[NodeID]float64
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@ -62,8 +71,15 @@ type BetweennessCentrality struct {
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}
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// NewBetweennessCentralityMetric creates a new BetweennessCentrality instance.
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func NewBetweennessCentralityMetric() *BetweennessCentrality {
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return &BetweennessCentrality{}
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// Users can specify the number of workers to use for calculating centrality.
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func NewBetweennessCentralityMetric(workers int) (*BetweennessCentrality, error) {
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// There should be at least one worker.
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if workers < 1 {
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return nil, fmt.Errorf("workers must be positive")
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}
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return &BetweennessCentrality{
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workers: workers,
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}, nil
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}
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// Name returns the name of the metric.
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@ -158,10 +174,47 @@ func (bc *BetweennessCentrality) Refresh(graph ChannelGraph) error {
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return err
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}
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// TODO: parallelize updates to centrality.
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centrality := make([]float64, len(cache.Nodes))
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var wg sync.WaitGroup
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work := make(chan int)
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partials := make(chan []float64, bc.workers)
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// Each worker will compute a partial result. This
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// partial result is a sum of centrality updates on
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// roughly N / workers nodes.
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worker := func() {
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defer wg.Done()
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partial := make([]float64, len(cache.Nodes))
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// Consume the next node, update centrality
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// parital to avoid unnecessary synchronizaton.
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for node := range work {
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betweennessCentrality(cache, node, partial)
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}
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partials <- partial
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}
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// Now start the N workers.
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wg.Add(bc.workers)
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for i := 0; i < bc.workers; i++ {
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go worker()
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}
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// Distribute work amongst workers Should be
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// fair when graph is sufficiently large.
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for node := range cache.Nodes {
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betweennessCentrality(cache, node, centrality)
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work <- node
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}
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close(work)
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wg.Wait()
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close(partials)
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// Collect and sum partials for final result.
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centrality := make([]float64, len(cache.Nodes))
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for partial := range partials {
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for i := 0; i < len(partial); i++ {
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centrality[i] += partial[i]
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}
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}
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// Get min/max to be able to normalize
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@ -169,11 +222,11 @@ func (bc *BetweennessCentrality) Refresh(graph ChannelGraph) error {
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bc.min = 0
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bc.max = 0
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if len(centrality) > 0 {
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for i := 1; i < len(centrality); i++ {
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if centrality[i] < bc.min {
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bc.min = centrality[i]
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} else if centrality[i] > bc.max {
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bc.max = centrality[i]
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for _, v := range centrality {
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if v < bc.min {
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bc.min = v
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} else if v > bc.max {
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bc.max = v
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}
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}
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}
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@ -1,15 +1,38 @@
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package autopilot
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import (
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"fmt"
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"testing"
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"github.com/btcsuite/btcd/btcec"
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"github.com/btcsuite/btcutil"
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)
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func TestBetweennessCentralityMetricConstruction(t *testing.T) {
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failing := []int{-1, 0}
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ok := []int{1, 10}
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for _, workers := range failing {
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m, err := NewBetweennessCentralityMetric(workers)
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if m != nil || err == nil {
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t.Fatalf("construction must fail with <= 0 workers")
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}
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}
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for _, workers := range ok {
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m, err := NewBetweennessCentralityMetric(workers)
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if m == nil || err != nil {
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t.Fatalf("construction must succeed with >= 1 workers")
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}
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}
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}
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// Tests that empty graph results in empty centrality result.
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func TestBetweennessCentralityEmptyGraph(t *testing.T) {
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centralityMetric := NewBetweennessCentralityMetric()
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centralityMetric, err := NewBetweennessCentralityMetric(1)
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if err != nil {
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t.Fatalf("construction must succeed with positive number of workers")
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}
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for _, chanGraph := range chanGraphs {
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graph, cleanup, err := chanGraph.genFunc()
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@ -91,8 +114,9 @@ func TestBetweennessCentralityWithNonEmptyGraph(t *testing.T) {
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},
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}
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tests := []struct {
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name string
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workers := []int{1, 3, 9, 100}
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results := []struct {
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normalize bool
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centrality []float64
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}{
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@ -110,7 +134,9 @@ func TestBetweennessCentralityWithNonEmptyGraph(t *testing.T) {
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},
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}
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for _, numWorkers := range workers {
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for _, chanGraph := range chanGraphs {
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numWorkers := numWorkers
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graph, cleanup, err := chanGraph.genFunc()
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if err != nil {
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t.Fatalf("unable to create graph: %v", err)
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@ -119,23 +145,27 @@ func TestBetweennessCentralityWithNonEmptyGraph(t *testing.T) {
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defer cleanup()
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}
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success := t.Run(chanGraph.name, func(t1 *testing.T) {
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centralityMetric := NewBetweennessCentralityMetric()
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graphNodes := buildTestGraph(t1, graph, graphDesc)
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testName := fmt.Sprintf("%v %d workers", chanGraph.name, numWorkers)
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success := t.Run(testName, func(t1 *testing.T) {
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centralityMetric, err := NewBetweennessCentralityMetric(numWorkers)
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if err != nil {
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t.Fatalf("construction must succeed with positive number of workers")
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}
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graphNodes := buildTestGraph(t1, graph, graphDesc)
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if err := centralityMetric.Refresh(graph); err != nil {
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t1.Fatalf("error while calculating betweeness centrality")
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}
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for _, test := range tests {
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test := test
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centrality := centralityMetric.GetMetric(test.normalize)
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for _, expected := range results {
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expected := expected
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centrality := centralityMetric.GetMetric(expected.normalize)
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if len(centrality) != graphDesc.nodes {
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t.Fatalf("expected %v values, got: %v",
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graphDesc.nodes, len(centrality))
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}
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for node, nodeCentrality := range test.centrality {
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for node, nodeCentrality := range expected.centrality {
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nodeID := NewNodeID(graphNodes[node])
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calculatedCentrality, ok := centrality[nodeID]
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if !ok {
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@ -144,7 +174,7 @@ func TestBetweennessCentralityWithNonEmptyGraph(t *testing.T) {
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if nodeCentrality != calculatedCentrality {
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t1.Errorf("centrality for node: %v should be %v, got: %v",
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node, test.centrality[node], calculatedCentrality)
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node, nodeCentrality, calculatedCentrality)
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}
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}
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}
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@ -153,4 +183,5 @@ func TestBetweennessCentralityWithNonEmptyGraph(t *testing.T) {
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break
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}
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}
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}
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}
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@ -10,6 +10,7 @@ import (
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"io"
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"math"
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"net/http"
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"runtime"
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"sort"
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"strings"
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"sync"
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@ -4693,7 +4694,12 @@ func (r *rpcServer) GetNodeMetrics(ctx context.Context,
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// Calculate betweenness centrality if requested. Note that depending on the
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// graph size, this may take up to a few minutes.
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channelGraph := autopilot.ChannelGraphFromDatabase(graph)
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centralityMetric := autopilot.NewBetweennessCentralityMetric()
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centralityMetric, err := autopilot.NewBetweennessCentralityMetric(
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runtime.NumCPU(),
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)
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if err != nil {
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return nil, err
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}
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if err := centralityMetric.Refresh(channelGraph); err != nil {
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return nil, err
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}
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